Basic Information
Locus ID:
Thhalv10017764m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
protein ubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 5020084 | 5020845 | - | Thhalv10017764m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 27,624.43 Da | 51.15 | 83.42 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 18 | 62 | 4.0E-10 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 97 | 1.44E-10 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 95 | 222 | 5.23E-12 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 15 | 69 | 2.3E-5 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 70 | 207 | 8.4E-9 | IPR015915 |
| SMART | SM00256 | fbox_2 | 21 | 61 | 4.6E-8 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 15 | 61 | 12.33237 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38940.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_006410042.2 | F-box/kelch-repeat protein At4g38940 [Eutrema salsugineum] | 0 |
| Q9SVJ9 | F-box/kelch-repeat protein At4g38940 OS=Arabidopsis thaliana OX=3702 GN=At4g38940 PE=1 SV=1 | 0 | |
| TrEMBL | V4MG50 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017764mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 31 | Thhalv10002293m.g.v1.0, Thhalv10015844m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g12680.v2.2, Sp5g22490.v2.2 |
| Brassicaceae | Brassica nigra | 12 | BniB01g013190.2N, BniB01g013200.2N, BniB01g013210.2N ... |