Basic Information
Locus ID:
Thhalv10017722m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Cysteine Histidine-rich C1 domain family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 5451142 | 5453731 | - | Thhalv10017722m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.19 | 88,579.28 Da | 54.42 | 79.99 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 454 | 500 | 5.6E-9 | IPR004146 |
| Pfam | PF03107 | C1 domain | 61 | 109 | 1.4E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 241 | 291 | 3.9E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 183 | 230 | 5.8E-7 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 156 | 244 | 3.4E-15 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 634 | 693 | 1.2E-7 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 398 | 449 | 3.92E-5 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 453 | 501 | 5.93E-9 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 545 | 627 | 1.98E-11 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 274 | 354 | 4.39E-11 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 36 | 111 | 3.66E-14 | - |
| Gene3D | G3DSA:3.30.60.20 | - | 193 | 252 | 3.3E-5 | - |
| SMART | SM00249 | PHD_3 | 323 | 368 | 22.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 144 | 222 | 3.8 | IPR001965 |
| SMART | SM00249 | PHD_3 | 705 | 753 | 0.87 | IPR001965 |
| SMART | SM00109 | c1_12 | 636 | 685 | 1.9 | IPR002219 |
| SMART | SM00109 | c1_12 | 187 | 235 | 0.91 | IPR002219 |
| SMART | SM00109 | c1_12 | 525 | 576 | 0.3 | IPR002219 |
| SMART | SM00249 | PHD_3 | 596 | 658 | 5.7 | IPR001965 |
| SMART | SM00109 | c1_12 | 584 | 628 | 2.3 | IPR002219 |
| SMART | SM00249 | PHD_3 | 262 | 314 | 7.0 | IPR001965 |
| SMART | SM00109 | c1_12 | 306 | 360 | 1.5 | IPR002219 |
| SMART | SM00249 | PHD_3 | 416 | 478 | 12.0 | IPR001965 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 526 | 576 | 8.0487 | IPR002219 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 583 | 630 | 8.8344 | IPR002219 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 186 | 237 | 8.2136 | IPR002219 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21840.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_006410101.1 | uncharacterized protein LOC18026661 [Eutrema salsugineum] | 0 |
| TrEMBL | V4M5Q0 | Phorbol-ester/DAG-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017722mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G21810.1, AT2G21830.1, AT2G21840.1, AT2G21850.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000096m.g.v1.0, Thhalv10000100m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g01290.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g064140.2N, BniB05g064170.2N, BniB07g028200.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1160 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0001 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12109, nbisL1-mrna-5028, nbisL1-mrna-5029 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG17.926 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1892 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-3275, nbisL1-mrna-3288, nbisL1-mrna-3294 ... |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13823, nbisL1-mrna-5376 |
| Salicaceae | Populus euphratica | 5 | populus_peu08735, populus_peu19514, populus_peu19515 ... |