Basic Information
Locus ID:
Thhalv10017702m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 6975691 | 6976547 | - | Thhalv10017702m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.89 | 20,943.80 Da | 49.77 | 88.09 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 31 | 117 | 8.5E-18 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 26 | 130 | 2.62E-25 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 12 | 127 | 2.5E-24 | IPR036431 |
| SMART | SM00501 | bright_3 | 29 | 122 | 3.1E-20 | IPR001606 |
| SMART | SM01014 | ARID_2 | 25 | 117 | 1.5E-21 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 28 | 121 | 22.689732 | IPR001606 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_024004115.1 | high mobility group B protein 15 [Eutrema salsugineum] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | V4MH19 | ARID domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017702mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology