halophFGD

Basic Information

Locus ID: Thhalv10017659m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: nuclear envelope reassembly

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_10	7196336	7197409	+	Thhalv10017659m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.46	41,705.17 Da	35.83	88.41	-0.31

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	6	45	2.9E-9	IPR001810
SUPERFAMILY	SSF81383	F-box domain	6	57	3.66E-8	IPR036047
SUPERFAMILY	SSF50969	YVTN repeat-like/Quinoprotein amine dehydrogenase	64	344	2.71E-6	IPR011044
Gene3D	G3DSA:1.20.1280.50	-	7	46	1.4E-7	-
SMART	SM00256	fbox_2	10	50	6.0E-5	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14012 (UBX domain-containing protein 1)

Pathway:

ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G22165.1	F-box family protein with a domain of unknown function (DUF295).
RefSeq	XP_006410455.2	probable F-box protein At4g22165 [Eutrema salsugineum]
Swiss-Prot	P0CG94	Probable F-box protein At4g22165 OS=Arabidopsis thaliana OX=3702 GN=At4g22165 PE=4 SV=1
TrEMBL	V4MH67	F-box domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017659mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	36	AT1G10110.1, AT1G27540.1, AT1G27550.1, AT1G27580.1 ... AT1G67160.1, AT1G69090.1, AT2G03560.1, AT2G03580.1, AT2G03610.1, AT2G04810.1, AT2G04830.1, AT2G04840.1, AT2G05970.1, AT2G14290.1, AT2G14500.1, AT2G24080.1, AT2G33190.1, AT2G33200.1, AT3G03726.1, AT3G03730.1, AT3G22345.1, AT4G10820.1, AT4G12810.1, AT4G12820.1, AT4G14165.1, AT4G17565.1, AT4G22060.1, AT4G22165.1, AT4G22170.1, AT4G22180.1, AT4G22660.1, AT5G14160.1, AT5G25290.1, AT5G25300.1, AT5G38270.1, AT5G66830.1
Brassicaceae	Eutrema salsugineum	24	Thhalv10002155m.g.v1.0, Thhalv10003011m.g.v1.0 ... Thhalv10003406m.g.v1.0, Thhalv10005536m.g.v1.0, Thhalv10005623m.g.v1.0, Thhalv10005703m.g.v1.0, Thhalv10009751m.g.v1.0, Thhalv10009801m.g.v1.0, Thhalv10010442m.g.v1.0, Thhalv10013780m.g.v1.0, Thhalv10013894m.g.v1.0, Thhalv10015550m.g.v1.0, Thhalv10015724m.g.v1.0, Thhalv10017543m.g.v1.0, Thhalv10017659m.g.v1.0, Thhalv10017793m.g.v1.0, Thhalv10022303m.g.v1.0, Thhalv10025429m.g.v1.0, Thhalv10025466m.g.v1.0, Thhalv10026778m.g.v1.0, Thhalv10027445m.g.v1.0, Thhalv10027492m.g.v1.0, Thhalv10028086m.g.v1.0, Thhalv10028141m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp3g02700.v2.2, Sp3g24140.v2.2, Sp3g33180.v2.2 ... Sp4g15490.v2.2
Brassicaceae	Brassica nigra	32	BniB01g011090.2N, BniB02g015840.2N, BniB02g015860.2N ... BniB02g015870.2N, BniB02g079660.2N, BniB02g079670.2N, BniB02g079680.2N, BniB02g079710.2N, BniB04g003420.2N, BniB04g003440.2N, BniB04g020100.2N, BniB04g022220.2N, BniB05g014900.2N, BniB05g014910.2N, BniB05g014920.2N, BniB05g014930.2N, BniB05g018820.2N, BniB05g037380.2N, BniB05g045930.2N, BniB05g075540.2N, BniB06g013440.2N, BniB06g022380.2N, BniB06g022390.2N, BniB06g022410.2N, BniB07g060540.2N, BniB08g005890.2N, BniB08g010430.2N, BniB08g013090.2N, BniB08g013100.2N, BniB08g021060.2N, BniB08g034830.2N, BniB08g034840.2N