Basic Information
Locus ID:
Thhalv10017624m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Arginine and glutamate-rich 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 6344995 | 6346479 | - | Thhalv10017624m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 58,341.40 Da | 42.53 | 87.73 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 211 | 393 | 5.2E-51 | IPR006527 |
| Pfam | PF00646 | F-box domain | 5 | 43 | 1.2E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 138 | 4.97E-14 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 105 | 304 | 9.94E-7 | IPR011043 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 105 | 350 | 7.0E-44 | IPR017451 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G22940.1 | F-box associated ubiquitination effector family protein. | 0 |
| RefSeq | XP_006410257.2 | F-box/kelch-repeat protein At3g16740 [Eutrema salsugineum] | 0 |
| Q9LIK3 | Putative F-box protein At3g22940 OS=Arabidopsis thaliana OX=3702 GN=At3g22940 PE=4 SV=1 | 0 | |
| TrEMBL | V4LMD5 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017624mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000550m.g.v1.0, Thhalv10000638m.g.v1.0 ... |