Basic Information
Locus ID:
Thhalv10017592m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
CPK25
Description:
calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 8387332 | 8389383 | - | Thhalv10017592m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 60,262.80 Da | 41.52 | 81.98 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 147 | 404 | 1.29084E-136 | - |
| Pfam | PF00069 | Protein kinase domain | 147 | 405 | 2.5E-73 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 434 | 521 | 2.12E-11 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 137 | 430 | 1.16E-81 | IPR011009 |
| Gene3D | G3DSA:1.10.238.10 | - | 420 | 525 | 4.6E-21 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 233 | 413 | 1.1E-59 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 149 | 232 | 2.5E-26 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 446 | 515 | 4.6E-21 | - |
| SMART | SM00220 | serkin_6 | 147 | 405 | 1.8E-96 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 147 | 405 | 47.608273 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 448 | 483 | 11.305434 | IPR002048 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 267 | 279 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 153 | 176 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 87 | - | - |
| Coils | Coil | Coil | 470 | 490 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35890.1 | calcium-dependent protein kinase 25. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_024016693.1 | calcium-dependent protein kinase 25 [Eutrema salsugineum] | 0 |
| Q9SJ61 | Calcium-dependent protein kinase 25 OS=Arabidopsis thaliana OX=3702 GN=CPK25 PE=2 SV=1 | 0 | |
| TrEMBL | V4MAQ6 | Calcium-dependent protein kinase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017592mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G35890.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017592m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g18140.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g008540.2N |