Basic Information
Locus ID:
Thhalv10017579m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
nuclear envelope reassembly
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 7135777 | 7138357 | + | Thhalv10017579m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.51 | 53,530.44 Da | 61.42 | 68.77 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14273 | UBA_TAP-C_like | 280 | 302 | 2.0377E-5 | - |
| Pfam | PF14555 | UBA-like domain | 95 | 133 | 3.1E-8 | - |
| Pfam | PF14555 | UBA-like domain | 268 | 302 | 4.9E-8 | - |
| SUPERFAMILY | SSF46934 | UBA-like | 265 | 306 | 5.1E-5 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 91 | 133 | 1.6E-9 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 264 | 306 | 4.9E-7 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 94 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33000.1 | ubiquitin-associated (UBA)/TS-N domain-containing protein-related. | 0 |
| RefSeq | XP_024004123.1 | uncharacterized protein LOC18027607 [Eutrema salsugineum] | 0 |
| TrEMBL | V4MH50 | UBA domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017579mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G33000.1, AT2G33010.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10017579m.g.v1.0, Thhalv10017728m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g15370.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB06g022110.2N, BniB06g022130.2N, BniB06g022140.2N ... |