Basic Information
Locus ID:
Thhalv10017575m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 4565596 | 4566755 | - | Thhalv10017575m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 42,677.42 Da | 54.19 | 76.78 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 175 | 214 | 7.9E-9 | IPR006652 |
| Pfam | PF00646 | F-box domain | 19 | 63 | 5.6E-8 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 136 | 171 | 1.0E-8 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 63 | 5.23E-7 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 70 | 354 | 8.89E-26 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 107 | 237 | 7.8E-18 | IPR015915 |
| SMART | SM00256 | fbox_2 | 23 | 63 | 2.3E-7 | IPR001810 |
| SMART | SM00612 | kelc_smart | 140 | 185 | 1.6E-6 | IPR006652 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 17 | 63 | 11.034144 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G39560.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_013603844.1 | PREDICTED: F-box/kelch-repeat protein At5g39560-like [Brassica oleracea var. oleracea] | 0 |
| Q6NL02 | F-box/kelch-repeat protein At5g39560 OS=Arabidopsis thaliana OX=3702 GN=At5g39560 PE=2 SV=1 | 0 | |
| TrEMBL | V4LLH2 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017575mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G39560.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10017575m.g.v1.0, Thhalv10026834m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 3 | BniB02g084270.2N, BniB05g008250.2N, BniB05g008260.2N |