Basic Information
Locus ID:
Thhalv10017570m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Mitogen-Activated Protein Kinase Kinase Kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 10863156 | 10864031 | - | Thhalv10017570m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 32,684.29 Da | 52.56 | 83.75 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 14 | 260 | 1.9E-41 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 11 | 279 | 2.6E-56 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 8 | 283 | 2.0E-51 | - |
| SMART | SM00220 | serkin_6 | 12 | 260 | 1.1E-45 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 12 | 260 | 32.004337 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 129 | 141 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 18 | 40 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40560.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_006411325.1 | mitogen-activated protein kinase kinase kinase 5 [Eutrema salsugineum] | 0 |
| Q39008 | Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana OX=3702 GN=MEKK1 PE=1 SV=2 | 0 | |
| TrEMBL | V4MJH9 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017570mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G40500.1, AT2G40560.1 |
| Brassicaceae | Eutrema salsugineum | 9 | Thhalv10012219m.g.v1.0, Thhalv10017514m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g04290.v2.2, Sp2g09540.v2.2 |
| Brassicaceae | Brassica nigra | 15 | BniB01g004780.2N, BniB02g062010.2N, BniB03g062440.2N ... |