halophFGD

Basic Information

Locus ID: Thhalv10017545m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: Arginine and glutamate-rich 1

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_10	6061220	6062455	-	Thhalv10017545m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.45	43,097.97 Da	51.19	80.76	-0.46

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07734	F-box associated	188	329	1.0E-30	IPR006527
SUPERFAMILY	SSF81383	F-box domain	2	112	3.66E-14	IPR036047
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	80	184	3.5E-17	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K13173 (arginine and glutamate-rich protein 1)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G22940.1	F-box associated ubiquitination effector family protein.
RefSeq	XP_006410257.2	F-box/kelch-repeat protein At3g16740 [Eutrema salsugineum]
Swiss-Prot	Q9LIK3	Putative F-box protein At3g22940 OS=Arabidopsis thaliana OX=3702 GN=At3g22940 PE=4 SV=1
TrEMBL	V4M5Y8	FBA_1 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017545mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Eutrema salsugineum	5	Thhalv10000550m.g.v1.0, Thhalv10000638m.g.v1.0 ... Thhalv10017545m.g.v1.0, Thhalv10017624m.g.v1.0, Thhalv10027497m.g.v1.0