Basic Information
Locus ID:
Thhalv10017059m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
CCR4-associated factor 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 6675298 | 6676436 | - | Thhalv10017059m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 31,413.31 Da | 31.25 | 85.72 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 160 | 245 | 4.3E-6 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 15 | 138 | 5.3E-10 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 12 | 267 | 3.5E-87 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 2 | 271 | 3.6E-101 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_006410344.1 | probable CCR4-associated factor 1 homolog 7 [Eutrema salsugineum] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | V4M9K9 | poly(A)-specific ribonuclease OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017059mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology