Basic Information
Locus ID:
Thhalv10016960m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ubiquitin fusion degradation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 4555967 | 4558125 | + | Thhalv10016960m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 35,627.95 Da | 46.03 | 66.30 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 10 | 181 | 5.8E-78 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 106 | 179 | 1.5E-32 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 2 | 105 | 2.0E-43 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 262 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G29070.2 | Ubiquitin fusion degradation UFD1 family protein. | 0 |
| RefSeq | XP_006409950.1 | ubiquitin fusion degradation protein 1 homolog isoform X1 [Eutrema salsugineum] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | V4MFT3 | Ubiquitin fusion degradation protein 1 homolog OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016960mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology