halophFGD

Basic Information

Locus ID: Thhalv10016945m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: F-box Kelch-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_10	5261649	5262709	+	Thhalv10016945m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.92	37,138.89 Da	44.48	93.10	-0.11

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13964	Kelch motif	106	154	9.0E-6	-
Pfam	PF00646	F-box domain	16	60	7.5E-9	IPR001810
SUPERFAMILY	SSF81383	F-box domain	9	88	1.31E-8	IPR036047
SUPERFAMILY	SSF117281	Kelch motif	66	305	1.57E-22	IPR015915
Gene3D	G3DSA:1.20.1280.50	-	12	66	4.4E-5	-
Gene3D	G3DSA:2.120.10.80	-	67	268	9.6E-13	IPR015915
SMART	SM00256	fbox_2	19	59	1.3E-6	IPR001810
ProSiteProfiles	PS50181	F-box domain profile.	13	59	11.087133	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G38940.1	Galactose oxidase/kelch repeat superfamily protein.
RefSeq	XP_006410076.1	F-box/kelch-repeat protein At4g38940 [Eutrema salsugineum]
Swiss-Prot	Q9SVJ9	F-box/kelch-repeat protein At4g38940 OS=Arabidopsis thaliana OX=3702 GN=At4g38940 PE=1 SV=1
TrEMBL	V4LLY3	F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016945mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Eutrema salsugineum	31	Thhalv10002293m.g.v1.0, Thhalv10015844m.g.v1.0 ... Thhalv10016904m.g.v1.0, Thhalv10016945m.g.v1.0, Thhalv10017512m.g.v1.0, Thhalv10017515m.g.v1.0, Thhalv10017533m.g.v1.0, Thhalv10017591m.g.v1.0, Thhalv10017616m.g.v1.0, Thhalv10017621m.g.v1.0, Thhalv10017648m.g.v1.0, Thhalv10017704m.g.v1.0, Thhalv10017708m.g.v1.0, Thhalv10017748m.g.v1.0, Thhalv10017764m.g.v1.0, Thhalv10017773m.g.v1.0, Thhalv10017778m.g.v1.0, Thhalv10017832m.g.v1.0, Thhalv10017911m.g.v1.0, Thhalv10017955m.g.v1.0, Thhalv10027506m.g.v1.0, Thhalv10029145m.g.v1.0, Thhalv10029154m.g.v1.0, Thhalv10029170m.g.v1.0, Thhalv10029266m.g.v1.0, Thhalv10029317m.g.v1.0, Thhalv10029396m.g.v1.0, Thhalv10029437m.g.v1.0, Thhalv10029470m.g.v1.0, Thhalv10029517m.g.v1.0, Thhalv10029520m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g12680.v2.2, Sp5g22490.v2.2
Brassicaceae	Brassica nigra	12	BniB01g013190.2N, BniB01g013200.2N, BniB01g013210.2N ... BniB05g064040.2N, BniB05g064060.2N, BniB05g064070.2N, BniB06g019990.2N, BniB06g020020.2N, BniB08g016880.2N, BniB08g018650.2N, BniB08g018660.2N, BniB08g018680.2N