Basic Information
Locus ID:
Thhalv10016886m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 11786856 | 11788131 | + | Thhalv10016886m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 39,224.19 Da | 46.09 | 83.93 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 11 | 48 | 3.3E-7 | IPR001810 |
| Pfam | PF07734 | F-box associated | 206 | 293 | 1.7E-6 | IPR006527 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 108 | 290 | 1.09E-5 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 51 | 3.14E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 50 | 2.3E-5 | - |
| SMART | SM00256 | fbox_2 | 12 | 51 | 3.0E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 97 | 293 | 2.6E-20 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43270.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_006411557.2 | LOW QUALITY PROTEIN: F-box/LRR-repeat protein At2g43260 [Eutrema salsugineum] | 0 |
| Q8S8Q9 | F-box/LRR-repeat protein At2g43260 OS=Arabidopsis thaliana OX=3702 GN=At2g43260 PE=2 SV=1 | 0 | |
| TrEMBL | V4LR31 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016886mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 8 | AT1G49790.2, AT2G30615.1, AT2G42955.1, AT2G43260.1 ... |
| Brassicaceae | Eutrema salsugineum | 8 | Thhalv10001524m.g.v1.0, Thhalv10005447m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g31660.v2.2 |
| Brassicaceae | Brassica nigra | 11 | BniB01g002760.2N, BniB01g011350.2N, BniB02g072460.2N ... |