Basic Information
Locus ID:
Thhalv10016860m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 4118589 | 4120319 | - | Thhalv10016860m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 38,469.71 Da | 29.86 | 88.12 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02242 | cupin_11S_legumin_N | 3 | 172 | 3.09079E-71 | - |
| CDD | cd02243 | cupin_11S_legumin_C | 198 | 353 | 1.09947E-76 | - |
| Pfam | PF00190 | Cupin | 196 | 338 | 9.8E-24 | IPR006045 |
| Pfam | PF00190 | Cupin | 8 | 157 | 2.8E-31 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 11 | 345 | 8.29E-49 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 3 | 188 | 2.1E-35 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 195 | 356 | 2.5E-49 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 195 | 339 | 6.2E-15 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 3 | 157 | 1.9E-36 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 276 | 291 | 2.0E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 316 | 333 | 2.0E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 294 | 312 | 2.0E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 258 | 274 | 2.0E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 211 | 231 | 2.0E-13 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_006409901.1 | glutelin type-D 1 [Eutrema salsugineum] | 0 |
| Q8GZP6 | 11S globulin seed storage protein Ana o 2.0101 (Fragment) OS=Anacardium occidentale OX=171929 PE=1 SV=1 | 0 | |
| TrEMBL | V4M531 | 11S globulin OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016860mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology