Basic Information
Locus ID:
Thhalv10016765m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 10382850 | 10384502 | - | Thhalv10016765m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 42,222.31 Da | 79.48 | 59.59 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 193 | 234 | 6.73579E-22 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 268 | 377 | 3.9E-33 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 5 | 34 | 3.3E-11 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 192 | 234 | 5.8E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 182 | 239 | 8.84E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 240 | 2.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 193 | 233 | 1.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 193 | 234 | 12.031935 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 263 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_006411202.1 | probable E3 ubiquitin-protein ligase RHC2A [Eutrema salsugineum] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | V4LQ15 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016765mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology