Basic Information
Locus ID:
Thhalv10016730m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 8407351 | 8408849 | - | Thhalv10016730m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.49 | 45,948.98 Da | 46.76 | 104.13 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 11 | 54 | 4.49751E-24 | - |
| Pfam | PF04564 | U-box domain | 7 | 76 | 4.8E-22 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 108 | 389 | 5.76E-15 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 79 | 2.83E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 84 | 4.6E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 95 | 397 | 8.7E-17 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 10 | 74 | 1.3E-32 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 6 | 81 | 41.797699 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_006410763.1 | E3 ubiquitin-protein ligase PUB23 [Eutrema salsugineum] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | V4NZ25 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016730mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology