Basic Information
Locus ID:
Thhalv10016716m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
LicD family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 10176270 | 10177766 | - | Thhalv10016716m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 48,583.39 Da | 50.26 | 81.23 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 15 | 47 | 1.9E-6 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 215 | 296 | 9.5E-6 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 15 | 59 | 7.72E-10 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 106 | 352 | 1.9E-6 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 13 | 49 | 1.7E-5 | - |
| SMART | SM00256 | fbox_2 | 13 | 53 | 2.2E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 164 | 329 | 2.1E-18 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43260.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_006411150.2 | F-box/LRR-repeat protein At2g43260 [Eutrema salsugineum] | 0 |
| Q8S8Q9 | F-box/LRR-repeat protein At2g43260 OS=Arabidopsis thaliana OX=3702 GN=At2g43260 PE=2 SV=1 | 0 | |
| TrEMBL | V4MJ54 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016716mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 8 | AT1G49790.2, AT2G30615.1, AT2G42955.1, AT2G43260.1 ... |
| Brassicaceae | Eutrema salsugineum | 8 | Thhalv10001524m.g.v1.0, Thhalv10005447m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g31660.v2.2 |
| Brassicaceae | Brassica nigra | 11 | BniB01g002760.2N, BniB01g011350.2N, BniB02g072460.2N ... |