Basic Information
Locus ID:
Thhalv10016561m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 11045955 | 11047963 | + | Thhalv10016561m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.58 | 56,625.67 Da | 57.19 | 88.18 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 100 | 132 | 3.3E-6 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 314 | 445 | 3.5E-27 | IPR013187 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 179 | 466 | 1.28E-6 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 90 | 146 | 6.41E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 79 | 136 | 1.1E-7 | - |
| SMART | SM00256 | fbox_2 | 100 | 140 | 5.3E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 203 | 453 | 9.4E-39 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 94 | 144 | 9.603447 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40910.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_006411369.1 | F-box/LRR-repeat protein At2g40920 [Eutrema salsugineum] | 0 |
| Q3EBI7 | F-box protein At2g40910 OS=Arabidopsis thaliana OX=3702 GN=At2g40910 PE=2 SV=1 | 0 | |
| TrEMBL | V4MCA6 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016561mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 11 | AT2G16810.1, AT2G40910.1, AT2G40920.1, AT2G40925.1 ... |
| Brassicaceae | Eutrema salsugineum | 16 | Thhalv10004411m.g.v1.0, Thhalv10005275m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g05850.v2.2, Sp1g09440.v2.2, Sp4g23370.v2.2 |
| Brassicaceae | Brassica nigra | 35 | BniB01g038340.2N, BniB02g054720.2N, BniB02g059130.2N ... |