Basic Information
Locus ID:
Thhalv10016443m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Proteinaceous RNase P 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 6703555 | 6706312 | - | Thhalv10016443m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 64,917.72 Da | 52.76 | 77.38 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18671 | PIN_PRORP-Zc3h12a-like | 396 | 519 | 9.91125E-72 | - |
| Pfam | PF16953 | Protein-only RNase P | 338 | 565 | 1.4E-76 | IPR031595 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 88 | 297 | 1.6E-81 | IPR033443 |
| Gene3D | G3DSA:3.40.50.11980 | - | 356 | 531 | 5.1E-239 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 96 | 568 | 5.1E-239 | IPR011990 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 210 | 244 | 8.70333 | IPR002885 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_006410352.1 | proteinaceous RNase P 1, chloroplastic/mitochondrial [Eutrema salsugineum] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | V4LML2 | ribonuclease P OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016443mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology