Basic Information
Locus ID:
Thhalv10016428m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
S-locus lectin protein kinase family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 9036076 | 9038835 | + | Thhalv10016428m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 65,197.34 Da | 37.94 | 79.24 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 251 | 515 | 2.68409E-91 | - |
| CDD | cd01098 | PAN_AP_plant | 71 | 156 | 3.3084E-13 | - |
| Pfam | PF00069 | Protein kinase domain | 246 | 444 | 1.0E-44 | IPR000719 |
| Pfam | PF08276 | PAN-like domain | 77 | 141 | 3.4E-10 | IPR003609 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 227 | 515 | 7.96E-77 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 210 | 319 | 4.2E-32 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 320 | 526 | 8.8E-57 | - |
| SMART | SM00473 | ntp_6 | 73 | 155 | 3.1E-11 | IPR003609 |
| SMART | SM00220 | serkin_6 | 245 | 491 | 1.7E-25 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 245 | 523 | 36.47068 | IPR000719 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 73 | 156 | 9.287121 | IPR003609 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 251 | 272 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 365 | 377 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 551 | 582 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21380.1 | receptor kinase 3. encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels. | 0 |
| RefSeq | XP_024004150.1 | receptor-like serine/threonine-protein kinase SD1-6 [Eutrema salsugineum] | 0 |
| O81905 | Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 | 0 | |
| TrEMBL | V4MIC9 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016428mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10012685m.g.v1.0, Thhalv10014181m.g.v1.0 ... |