Basic Information
Locus ID:
Thhalv10016401m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 11001883 | 11007797 | - | Thhalv10016401m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 67,916.48 Da | 48.05 | 85.93 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06337 | DUSP domain | 38 | 144 | 3.3E-24 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 317 | 525 | 5.0E-46 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 315 | 504 | 1.51E-54 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 16 | 144 | 2.48E-27 | IPR035927 |
| Gene3D | G3DSA:3.10.20.90 | - | 158 | 247 | 7.1E-15 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 6 | 157 | 7.4E-36 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 302 | 550 | 1.3E-66 | - |
| SMART | SM00695 | dusp | 34 | 147 | 1.3E-44 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 317 | 605 | 26.985216 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 15 | 145 | 18.204321 | IPR006615 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 318 | 333 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_024003784.1 | ubiquitin carboxyl-terminal hydrolase 5 [Eutrema salsugineum] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | V4MC97 | Ubiquitinyl hydrolase 1 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016401mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology