Basic Information
Locus ID:
Thhalv10016376m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
L-type lectin-domain containing receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 4684490 | 4686376 | - | Thhalv10016376m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 69,018.35 Da | 32.02 | 96.10 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 28 | 265 | 7.85788E-83 | IPR001220 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 357 | 610 | 5.1E-35 | IPR001245 |
| Pfam | PF00139 | Legume lectin domain | 28 | 275 | 1.8E-70 | IPR001220 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 15 | 266 | 1.96E-73 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 335 | 612 | 5.54E-55 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 430 | 622 | 3.4E-39 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 26 | 267 | 9.0E-64 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 328 | 429 | 4.9E-24 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 354 | 624 | 26.760622 | IPR000719 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G29220.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_006409969.1 | probable inactive L-type lectin-domain containing receptor kinase III.1 [Eutrema salsugineum] | 0 |
| Q9ZW09 | Probable inactive L-type lectin-domain containing receptor kinase III.1 OS=Arabidopsis thaliana OX=3702 GN=LECRK31 PE=3 SV=1 | 0 | |
| TrEMBL | V4M8L6 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016376mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G29220.1, AT2G29250.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016376m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g12030.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g018300.2N |