Basic Information
Locus ID:
Thhalv10016366m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 7402123 | 7404342 | - | Thhalv10016366m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 71,607.18 Da | 42.11 | 90.61 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 188 | 224 | 0.00197513 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 366 | 624 | 8.2E-41 | IPR000719 |
| Pfam | PF01476 | LysM domain | 189 | 232 | 2.0E-4 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 334 | 627 | 8.99E-62 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 424 | 641 | 1.3E-51 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 187 | 240 | 1.8E-5 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 324 | 422 | 5.9E-16 | - |
| SMART | SM00257 | LysM_2 | 122 | 168 | 15.0 | IPR018392 |
| SMART | SM00257 | LysM_2 | 188 | 232 | 0.011 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 187 | 231 | 11.15045 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 354 | 643 | 30.774677 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 262 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_006410503.2 | protein LYK5 [Eutrema salsugineum] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | V4LN18 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016366mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology