Basic Information
Locus ID:
Thhalv10016364m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 4237400 | 4240062 | - | Thhalv10016364m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 71,916.45 Da | 47.18 | 97.65 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 261 | 303 | 9.0123E-26 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 470 | 508 | 4.9E-8 | IPR000225 |
| Pfam | PF04564 | U-box domain | 258 | 327 | 7.5E-23 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 385 | 425 | 1.4E-8 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 255 | 333 | 4.48E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 354 | 639 | 3.72E-47 | IPR016024 |
| Gene3D | G3DSA:1.20.930.20 | - | 4 | 122 | 1.9E-10 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 257 | 330 | 1.6E-30 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 337 | 651 | 2.0E-50 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 260 | 323 | 4.2E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 593 | 633 | 63.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 427 | 468 | 390.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 510 | 550 | 9.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 469 | 509 | 0.33 | IPR000225 |
| SMART | SM00185 | arm_5 | 551 | 591 | 110.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 385 | 426 | 0.0038 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 396 | 439 | 12.0224 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 256 | 330 | 45.362514 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 351 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28830.1 | PLANT U-BOX 12. | 0 |
| RefSeq | XP_006409918.1 | U-box domain-containing protein 12 isoform X1 [Eutrema salsugineum] | 0 |
| Q9ZV31 | U-box domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=PUB12 PE=2 SV=1 | 0 | |
| TrEMBL | V4NWX1 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016364mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology