Basic Information
Locus ID:
Thhalv10016303m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 6930770 | 6935791 | + | Thhalv10016303m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 80,792.28 Da | 48.79 | 63.32 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 499 | 735 | 8.79109E-61 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 584 | 621 | 0.0013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 667 | 701 | 4.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 545 | 577 | 4.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 510 | 535 | 5.9E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 1.2E-7 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 500 | 735 | 1.45E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 323 | 637 | 5.6E-36 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 638 | 737 | 2.3E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 581 | 621 | 6.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 704 | 740 | 270.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 624 | 660 | 230.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 538 | 577 | 2.5E-7 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 2.0E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 496 | 535 | 2.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 663 | 701 | 7.6E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 670 | 710 | 11.410742 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 545 | 577 | 12.881143 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 545 | 577 | 10.706503 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 588 | 630 | 11.210233 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 588 | 623 | 8.65015 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 503 | 538 | 8.755605 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 670 | 705 | 8.623787 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 503 | 544 | 11.210233 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.821852 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 522 | 536 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 408 | - | - |
| Coils | Coil | Coil | 79 | 99 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_006410398.2 | transcriptional corepressor LEUNIG_HOMOLOG [Eutrema salsugineum] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | V4NY39 | LisH domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016303mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology