Basic Information
Locus ID:
Thhalv10016296m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Cysteine Histidine-rich C1 domain family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 5463975 | 5466622 | - | Thhalv10016296m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 85,893.14 Da | 61.89 | 76.43 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 578 | 621 | 5.9E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 182 | 230 | 2.3E-9 | IPR004146 |
| Pfam | PF03107 | C1 domain | 453 | 499 | 9.5E-9 | IPR004146 |
| Pfam | PF03107 | C1 domain | 61 | 109 | 5.3E-7 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 156 | 244 | 5.23E-16 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 274 | 353 | 4.34E-11 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 544 | 622 | 2.62E-12 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 674 | 720 | 4.53E-6 | IPR011011 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 452 | 500 | 2.44E-9 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 36 | 111 | 2.55E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 680 | 730 | 3.3E-5 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 248 | 312 | 3.7E-5 | IPR013083 |
| SMART | SM00249 | PHD_3 | 594 | 654 | 3.1 | IPR001965 |
| SMART | SM00249 | PHD_3 | 686 | 735 | 5.1 | IPR001965 |
| SMART | SM00109 | c1_12 | 672 | 720 | 0.67 | IPR002219 |
| SMART | SM00109 | c1_12 | 306 | 368 | 0.27 | IPR002219 |
| SMART | SM00109 | c1_12 | 453 | 504 | 0.75 | IPR002219 |
| SMART | SM00249 | PHD_3 | 262 | 314 | 5.9 | IPR001965 |
| SMART | SM00109 | c1_12 | 526 | 572 | 0.59 | IPR002219 |
| SMART | SM00249 | PHD_3 | 322 | 372 | 3.2 | IPR001965 |
| SMART | SM00109 | c1_12 | 187 | 235 | 3.4 | IPR002219 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 305 | 358 | 7.9032 | IPR002219 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 541 | 599 | 8.786275 | IPR001841 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21840.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_006410101.1 | uncharacterized protein LOC18026661 [Eutrema salsugineum] | 0 |
| TrEMBL | V4LM05 | Phorbol-ester/DAG-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016296mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G21810.1, AT2G21830.1, AT2G21840.1, AT2G21850.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000096m.g.v1.0, Thhalv10000100m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g01290.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g064140.2N, BniB05g064170.2N, BniB07g028200.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1160 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0001 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12109, nbisL1-mrna-5028, nbisL1-mrna-5029 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG17.926 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1892 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-3275, nbisL1-mrna-3288, nbisL1-mrna-3294 ... |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13823, nbisL1-mrna-5376 |
| Salicaceae | Populus euphratica | 5 | populus_peu08735, populus_peu19514, populus_peu19515 ... |