Basic Information
Locus ID:
Thhalv10016239m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Contains the following InterPro domains Zinc finger, PHD-type, conserved site (InterPro IPR019786), Zinc finger, PHD-type (InterPro IPR001965), Zinc finger, FYVE PHD-type (InterPro IPR011011), Acyl-CoA N-acyltransferase (InterPro IPR016181), Zinc finger, PHD-finger (InterPro IPR019787)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 9266778 | 9272198 | - | Thhalv10016239m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 93,301.83 Da | 47.19 | 76.98 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 495 | 535 | 4.27102E-20 | - |
| Pfam | PF00628 | PHD-finger | 495 | 536 | 9.9E-9 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 224 | 279 | 1.7E-12 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 429 | 478 | 1.8E-16 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 490 | 537 | 1.85E-14 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 732 | 819 | 7.54E-9 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 573 | 628 | 1.75E-6 | IPR011011 |
| Gene3D | G3DSA:3.40.630.30 | - | 672 | 840 | 6.3E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 487 | 556 | 2.9E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 573 | 633 | 5.4E-10 | IPR013083 |
| SMART | SM00249 | PHD_3 | 495 | 536 | 4.5E-12 | IPR001965 |
| SMART | SM00249 | PHD_3 | 574 | 631 | 8.1E-4 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 493 | 538 | 10.006199 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 680 | 830 | 9.313385 | IPR000182 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 496 | 535 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 93 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_006410939.1 | uncharacterized protein LOC18026862 [Eutrema salsugineum] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | V4MB71 | Chromodomain-helicase-DNA-binding protein 4 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016239mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology