Basic Information
Locus ID:
Thhalv10016236m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 2997422 | 3001573 | - | Thhalv10016236m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.73 | 96,814.21 Da | 61.12 | 64.68 | -0.97 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 803 | 841 | 1.22909E-16 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 801 | 847 | 3.5E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 802 | 848 | 3.53E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 780 | 853 | 4.6E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 803 | 842 | 10.497623 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 460 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 596 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 652 | 697 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 438 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 596 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 460 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 652 | 684 | - | - |
| Coils | Coil | Coil | 420 | 440 | - | - |
| Coils | Coil | Coil | 732 | 769 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_006409810.1 | uncharacterized protein LOC18027443 isoform X1 [Eutrema salsugineum] | 0 |
| TrEMBL | V4MFE5 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016236mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology