Basic Information
Locus ID:
Thhalv10016206m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 9351031 | 9354249 | - | Thhalv10016206m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 102,989.53 Da | 51.60 | 66.42 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 406 | 437 | 9.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 549 | 586 | 0.0017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 508 | 544 | 1.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 684 | 721 | 0.044 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 400 | 726 | 4.0E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 390 | 490 | 4.5E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 491 | 763 | 7.7E-50 | IPR015943 |
| SMART | SM00320 | WD40_4 | 588 | 627 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 635 | 679 | 3.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 399 | 438 | 2.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 680 | 721 | 0.0035 | IPR001680 |
| SMART | SM00320 | WD40_4 | 547 | 586 | 7.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 506 | 544 | 2.3E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 406 | 440 | 12.209223 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 553 | 588 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 406 | 447 | 15.253835 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 553 | 588 | 10.548323 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 513 | 547 | 11.444681 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 698 | 730 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 513 | 553 | 14.585471 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 531 | 545 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 425 | 439 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 425 | 439 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 531 | 545 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 573 | 587 | 1.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 778 | 808 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 834 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 842 | 861 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_006410958.1 | uncharacterized protein LOC18026982 [Eutrema salsugineum] | 0 |
| Q5JSH3 | WD repeat-containing protein 44 OS=Homo sapiens OX=9606 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | V4NZJ6 | WD repeat-containing protein 44-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016206mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology