Basic Information
Locus ID:
Thhalv10016173m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 8811450 | 8817354 | - | Thhalv10016173m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 113,354.00 Da | 44.81 | 80.26 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 637 | 677 | 4.00209E-19 | - |
| Pfam | PF00628 | PHD-finger | 638 | 679 | 7.0E-8 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 314 | 368 | 5.4E-13 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 574 | 620 | 1.8E-13 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 624 | 682 | 3.29E-16 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 733 | 781 | 2.47E-9 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 629 | 697 | 1.1E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 724 | 784 | 8.2E-13 | IPR013083 |
| SMART | SM00249 | PHD_3 | 725 | 782 | 0.024 | IPR001965 |
| SMART | SM00249 | PHD_3 | 637 | 678 | 1.9E-11 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 635 | 680 | 10.549099 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 638 | 677 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 442 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 463 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_006410846.1 | uncharacterized protein LOC18027534 isoform X1 [Eutrema salsugineum] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | V4M7L2 | PHD-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016173mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology