Basic Information
Locus ID:
Thhalv10016165m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 3041536 | 3047774 | - | Thhalv10016165m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 120,784.65 Da | 46.67 | 78.49 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 650 | 698 | 3.0E-17 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 432 | 487 | 5.8E-13 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 965 | 1053 | 1.92E-7 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 803 | 859 | 1.31E-8 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 704 | 758 | 9.67E-14 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 804 | 864 | 7.7E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 705 | 792 | 1.5E-15 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 906 | 1075 | 5.4E-7 | - |
| SMART | SM00249 | PHD_3 | 716 | 757 | 1.5E-9 | IPR001965 |
| SMART | SM00249 | PHD_3 | 805 | 861 | 0.02 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 714 | 759 | 9.9795 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 717 | 756 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 569 | 615 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 569 | 613 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_006409814.1 | uncharacterized protein LOC18027447 [Eutrema salsugineum] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | V4M880 | PHD-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016165mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology