Basic Information
Locus ID:
Thhalv10016154m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_10 | 8035152 | 8041520 | + | Thhalv10016154m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 139,697.25 Da | 50.87 | 73.61 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 989 | 1245 | 5.54308E-108 | - |
| CDD | cd06410 | PB1_UP2 | 185 | 280 | 4.67595E-43 | - |
| Pfam | PF00564 | PB1 domain | 197 | 281 | 1.1E-21 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 984 | 1245 | 8.9E-61 | IPR001245 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 198 | 286 | 1.93E-21 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 972 | 1244 | 5.54E-77 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1072 | 1266 | 1.0E-52 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 200 | 281 | 6.6E-11 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 976 | 1071 | 9.4E-26 | - |
| SMART | SM00666 | PB1_new | 196 | 282 | 6.5E-33 | IPR000270 |
| SMART | SM00220 | serkin_6 | 983 | 1248 | 1.6E-57 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 983 | 1248 | 40.838085 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 989 | 1010 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1107 | 1119 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1216 | 1238 | 2.7E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1101 | 1119 | 2.7E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1065 | 1078 | 2.7E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1172 | 1194 | 2.7E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 559 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 585 | 599 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 609 | 631 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 559 | 631 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 463 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 932 | 953 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 463 | 514 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35050.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_006410663.1 | uncharacterized protein LOC18027223 [Eutrema salsugineum] | 0 |
| O64768 | RAF-like serine/threonine-protein kinase 24 OS=Arabidopsis thaliana OX=3702 GN=RAF24 PE=1 SV=1 | 0 | |
| TrEMBL | V4NYT8 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016154mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology