Basic Information
Locus ID:
Thhalv10016009m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 5381207 | 5383339 | - | Thhalv10016009m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.62 | 36,118.92 Da | 52.40 | 80.44 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14281 | UBA2_Rad23_like | 215 | 252 | 7.93248E-12 | - |
| Pfam | PF00627 | UBA/TS-N domain | 218 | 251 | 2.1E-5 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 113 | 161 | 1.1E-11 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 19 | 68 | 4.6E-8 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 276 | 309 | 1.0E-8 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 19 | 84 | 9.67E-12 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 269 | 313 | 1.72E-10 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 212 | 254 | 5.11E-9 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 106 | 162 | 2.09E-11 | IPR036353 |
| Gene3D | G3DSA:1.10.10.540 | - | 100 | 162 | 1.3E-12 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 7 | 75 | 7.9E-13 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 267 | 314 | 2.5E-19 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 207 | 256 | 2.8E-17 | - |
| SMART | SM00165 | uba_6 | 274 | 311 | 8.7E-7 | IPR015940 |
| SMART | SM00213 | ubq_7 | 6 | 72 | 7.2E-4 | IPR000626 |
| SMART | SM00165 | uba_6 | 216 | 253 | 1.3E-4 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 271 | 312 | 13.390292 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 213 | 254 | 11.486622 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 20 | 76 | 11.83414 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 242 | 257 | 3.1E-20 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 132 | 154 | 3.1E-20 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 227 | 241 | 3.1E-20 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 210 | 226 | 3.1E-20 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 103 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16090.1 | 0 | |
| RefSeq | XP_024012494.1 | ubiquitin receptor RAD23c isoform X1 [Eutrema salsugineum] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | V4LD35 | Ubiquitin receptor RAD23 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016009mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology