Basic Information
Locus ID:
Thhalv10016005m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
endoplasmic reticulum stress-induced pre-emptive quality control
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 3581073 | 3582487 | - | Thhalv10016005m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 30,117.01 Da | 57.09 | 106.46 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 20 | 100 | 1.60812E-12 | - |
| Pfam | PF00240 | Ubiquitin family | 51 | 101 | 4.0E-8 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 12 | 114 | 2.76E-13 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 15 | 124 | 1.8E-14 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 18 | 87 | 12.618054 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 180 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G11080.2 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_024012171.1 | uncharacterized protein LOC18019102 [Eutrema salsugineum] | 0 |
| D5LXJ0 | Ubiquitin-like domain-containing protein CIP73 OS=Lotus japonicus OX=34305 GN=CIP73 PE=1 SV=1 | 0 | |
| TrEMBL | V4N688 | Ubiquitin-like domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016005mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G11080.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016005m.g.v1.0 |