Basic Information
Locus ID:
Thhalv10015956m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
mRNA 3'-splice site recognition
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 3167930 | 3168822 | - | Thhalv10015956m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 27,078.44 Da | 51.98 | 85.06 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49130.1 | SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein. | 0 |
| RefSeq | XP_010467694.1 | PREDICTED: uncharacterized protein LOC104747709 [Camelina sativa] | 0 |
| TrEMBL | V4KSL2 | RGS domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015956mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT3G49130.1, AT5G06520.1, AT5G06890.1, AT5G12280.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10015432m.g.v1.0, Thhalv10015678m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 4 | BniB03g006140.2N, BniB05g073630.2N, BniB05g073670.2N ... |