Basic Information
Locus ID:
Thhalv10015880m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 834346 | 835130 | + | Thhalv10015880m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.24 | 24,154.15 Da | 32.44 | 76.30 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 62 | 179 | 1.6E-17 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 5 | 211 | 1.48E-53 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 2 | 211 | 3.0E-72 | - |
| SMART | SM00220 | serkin_6 | 9 | 211 | 2.3E-6 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 211 | 19.622952 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 83 | 95 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19470.1 | casein kinase I-like 5. | 0 |
| RefSeq | XP_006409051.2 | casein kinase 1-like protein 5 isoform X2 [Eutrema salsugineum] | 0 |
| Q9ZUP4 | Casein kinase 1-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=CKL5 PE=1 SV=1 | 0 | |
| TrEMBL | V4LKB7 | Protein kinase domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015880mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1043.V1.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015880m.g.v1.0 |
| Brassicaceae | Brassica nigra | 1 | BniB07g040720.2N |
| Poaceae | Zea mays | 5 | Zm00001eb075820_P001, Zm00001eb085650_P001 ... |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8750 |