Basic Information
Locus ID:
Thhalv10015840m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 2215016 | 2216845 | + | Thhalv10015840m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 49,395.93 Da | 55.68 | 88.32 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 245 | 386 | 1.7E-12 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 215 | 420 | 1.13E-25 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 26 | 80 | 1.56E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2 | 89 | 7.5E-13 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 316 | 446 | 6.4E-10 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 203 | 313 | 9.1E-14 | - |
| SMART | SM00219 | tyrkin_6 | 232 | 443 | 0.0014 | IPR020635 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 232 | 446 | 12.372211 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 148 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07150.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_024012113.1 | probable inactive receptor-like protein kinase At3g56050 [Eutrema salsugineum] | 0 |
| Q9LYN6 | Probable inactive receptor-like protein kinase At3g56050 OS=Arabidopsis thaliana OX=3702 GN=At3g56050 PE=2 SV=1 | 0 | |
| TrEMBL | V4KRS9 | Protein kinase domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015840mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07150.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013141m.g.v1.0, Thhalv10015840m.g.v1.0 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG066390 |