Basic Information
Locus ID:
Thhalv10015828m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 2897843 | 2899511 | - | Thhalv10015828m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 59,548.61 Da | 49.21 | 77.71 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 159 | 224 | 2.6E-13 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 239 | 283 | 1.6E-5 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 93 | 167 | 2.0E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 173 | 231 | 5.05E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 238 | 296 | 2.22E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 168 | 4.0E-7 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 220 | 454 | 3.7E-25 | - |
| SMART | SM00647 | ibrneu5 | 158 | 224 | 2.1E-18 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 233 | 294 | 0.31 | IPR002867 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 463 | 486 | 8.061142 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 78 | 298 | 31.329494 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 467 | 486 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 517 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 524 | - | - |
| Coils | Coil | Coil | 110 | 130 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08730.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_006399384.1 | probable E3 ubiquitin-protein ligase ARI16 [Eutrema salsugineum] | 0 |
| Q9C5A4 | Probable E3 ubiquitin-protein ligase ARI16 OS=Arabidopsis thaliana OX=3702 GN=ARI16 PE=2 SV=1 | 0 | |
| TrEMBL | V4LEJ8 | RBR-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015828mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G08730.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013280m.g.v1.0, Thhalv10015828m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 5 | Sp4g18730.v2.2, Sp5g15470.v2.2, Sp5g15490.v2.2 ... |
| Brassicaceae | Brassica nigra | 5 | BniB05g027560.2N, BniB08g058640.2N, BniB08g058660.2N ... |