Basic Information
Locus ID:
Thhalv10015768m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 11393130 | 11394068 | - | Thhalv10015768m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.99 | 35,464.38 Da | 54.91 | 85.29 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 249 | 291 | 1.3868E-17 | - |
| Pfam | PF13639 | Ring finger domain | 249 | 291 | 1.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 249 | 296 | 2.43E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 196 | 297 | 6.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 250 | 290 | 9.9E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 250 | 291 | 13.271187 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53910.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024011209.1 | E3 ubiquitin-protein ligase RING1-like [Eutrema salsugineum] | 0 |
| Q9P0P0 | E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1 | 0 | |
| TrEMBL | V4LHB1 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015768mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G53910.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015768m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp6g15980.v2.2, Sp6g16100.v2.2, Sp6g27690.v2.2 |