halophFGD

Basic Information

Locus ID: Thhalv10015758m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: protein modification by small protein conjugation

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_2	16211809	16213518	-	Thhalv10015758m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.29	20,799.81 Da	53.72	85.56	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00195	UBCc	38	161	5.84119E-26	IPR000608
Pfam	PF00179	Ubiquitin-conjugating enzyme	38	160	5.9E-22	IPR000608
SUPERFAMILY	SSF54495	UBC-like	37	162	2.03E-24	IPR016135
Gene3D	G3DSA:3.10.110.10	Ubiquitin Conjugating Enzyme	13	168	1.2E-25	IPR016135
SMART	SM00212	ubc_7	29	177	1.8E-5	-
ProSiteProfiles	PS50127	Ubiquitin-conjugating (UBC) core domain profile.	26	177	23.387672	IPR000608

KEGG Pathway

KO Term:

K06689 (ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23])

Pathway:

ko04013 (MAPK signaling pathway - fly) map04013 (MAPK signaling pathway - fly) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G32790.1	Ubiquitin-conjugating enzyme family protein.
RefSeq	XP_006409449.1	ubiquitin-conjugating enzyme E2 28 [Eutrema salsugineum]
Swiss-Prot	Q9DDJ0	SUMO-conjugating enzyme UBC9-B OS=Danio rerio OX=7955 GN=ube2ib PE=1 SV=1
TrEMBL	V4M791	UBC core domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023193mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Eutrema salsugineum	20	Thhalv10001269m.g.v1.0, Thhalv10002197m.g.v1.0 ... Thhalv10002203m.g.v1.0, Thhalv10002233m.g.v1.0, Thhalv10002235m.g.v1.0, Thhalv10002264m.g.v1.0, Thhalv10002338m.g.v1.0, Thhalv10003491m.g.v1.0, Thhalv10009334m.g.v1.0, Thhalv10009877m.g.v1.0, Thhalv10011082m.g.v1.0, Thhalv10011132m.g.v1.0, Thhalv10012339m.g.v1.0, Thhalv10015758m.g.v1.0, Thhalv10019783m.g.v1.0, Thhalv10023193m.g.v1.0, Thhalv10024154m.g.v1.0, Thhalv10026858m.g.v1.0, Thhalv10029190m.g.v1.0, Thhalv10029369m.g.v1.0