Basic Information
Locus ID:
Thhalv10015752m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 9077101 | 9077629 | - | Thhalv10015752m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 16,486.35 Da | 63.05 | 79.26 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 90 | 138 | 2.65E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 61 | 149 | 2.7E-5 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 91 | 144 | 8.963311 | IPR001841 |
| Coils | Coil | Coil | 12 | 32 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57820.1 | zinc ion binding. | 0 |
| RefSeq | XP_006401164.1 | uncharacterized protein LOC18016441 [Eutrema salsugineum] | 0 |
| TrEMBL | V4LJK4 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015752mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G57820.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015752m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g19510.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g037190.2N, BniB05g037420.2N |