Basic Information
Locus ID:
Thhalv10015712m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 5964002 | 5966922 | - | Thhalv10015712m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 45,355.49 Da | 64.80 | 69.47 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 182 | 225 | 3.02055E-19 | - |
| Pfam | PF13639 | Ring finger domain | 182 | 225 | 1.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 164 | 229 | 1.26E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 231 | 3.1E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 183 | 224 | 5.9E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 183 | 225 | 12.976127 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 152 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024011427.1 | RING-H2 finger protein ATL52 [Eutrema salsugineum] | 0 |
| Q9LF64 | RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1 | 0 | |
| TrEMBL | V4KUW6 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015712mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology