Basic Information
Locus ID:
Thhalv10015682m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 3845365 | 3846960 | - | Thhalv10015682m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 61,139.27 Da | 55.50 | 69.04 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 146 | 194 | 9.63361E-14 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 146 | 186 | 1.0E-4 | IPR018957 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 217 | 280 | 1.9E-15 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 302 | 345 | 4.6E-9 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 142 | 226 | 2.12E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 217 | 287 | 6.13E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 299 | 347 | 1.24E-17 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 276 | 529 | 2.0E-79 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 231 | 4.5E-16 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 217 | 280 | 1.6E-21 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 288 | 354 | 0.043 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 142 | 358 | 51.385406 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 146 | 192 | 9.376395 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 329 | 338 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| Coils | Coil | Coil | 366 | 421 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006399686.1 | probable E3 ubiquitin-protein ligase ARI5 isoform X1 [Eutrema salsugineum] | 0 |
| Q8L829 | Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana OX=3702 GN=ARI5 PE=2 SV=1 | 0 | |
| TrEMBL | V4LBT5 | RBR-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015682mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology