Basic Information
Locus ID:
Thhalv10015679m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 8818357 | 8819298 | + | Thhalv10015679m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 34,894.13 Da | 92.99 | 77.19 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 142 | 184 | 2.32299E-17 | - |
| Pfam | PF13639 | Ring finger domain | 141 | 184 | 1.3E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 133 | 189 | 1.09E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 189 | 1.9E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 142 | 183 | 3.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 142 | 184 | 11.840146 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 294 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58580.1 | TOXICOS EN LEVADURA 63. | 0 |
| RefSeq | XP_006401065.1 | RING-H2 finger protein ATL63 [Eutrema salsugineum] | 0 |
| Q9LUZ9 | RING-H2 finger protein ATL63 OS=Arabidopsis thaliana OX=3702 GN=ATL63 PE=2 SV=1 | 0 | |
| TrEMBL | V4LRP7 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015679mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G58580.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015679m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g20280.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g037990.2N, BniB08g013050.2N |