Basic Information
Locus ID:
Thhalv10015678m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
mRNA 3'-splice site recognition
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 3166830 | 3167754 | - | Thhalv10015678m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 23,096.50 Da | 44.13 | 80.64 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01805 | Surp module | 58 | 108 | 1.4E-12 | IPR000061 |
| SUPERFAMILY | SSF109905 | Surp module (SWAP domain) | 51 | 108 | 1.03E-12 | IPR035967 |
| Gene3D | G3DSA:1.10.10.790 | Surp module | 52 | 109 | 1.3E-18 | IPR035967 |
| SMART | SM00648 | surpneu2 | 57 | 110 | 1.1E-7 | IPR000061 |
| ProSiteProfiles | PS50128 | SURP motif repeat profile. | 59 | 101 | 12.744041 | IPR000061 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06520.1 | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein. | 0 |
| RefSeq | XP_024012139.1 | probable splicing factor 3A subunit 1 [Eutrema salsugineum] | 0 |
| TrEMBL | V4LB96 | SURP motif domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015678mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT3G49130.1, AT5G06520.1, AT5G06890.1, AT5G12280.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10015432m.g.v1.0, Thhalv10015678m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 4 | BniB03g006140.2N, BniB05g073630.2N, BniB05g073670.2N ... |