Basic Information
Locus ID:
Thhalv10015640m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 10601068 | 10601787 | - | Thhalv10015640m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 26,982.59 Da | 42.48 | 85.90 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 185 | 228 | 5.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 185 | 232 | 4.99E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 165 | 238 | 3.0E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 186 | 227 | 1.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 186 | 228 | 12.976127 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54990.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006401501.1 | uncharacterized protein LOC18016540 [Eutrema salsugineum] | 0 |
| Q9SNB6 | E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1 | 0 | |
| TrEMBL | V4LGT5 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015640mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G54990.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015640m.g.v1.0 |
| Brassicaceae | Brassica nigra | 2 | BniB05g034850.2N, BniB05g034860.2N |