Basic Information
Locus ID:
Thhalv10015609m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
protein modification by small protein conjugation or removal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 2267154 | 2269491 | - | Thhalv10015609m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 25,773.82 Da | 61.75 | 68.18 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 171 | 211 | 3.17267E-15 | - |
| Pfam | PF17123 | RING-like zinc finger | 171 | 198 | 7.4E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 164 | 216 | 1.41E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 136 | 217 | 1.4E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 171 | 211 | 6.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 171 | 212 | 10.674659 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07225.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024012072.1 | E3 ubiquitin-protein ligase RING1-like [Eutrema salsugineum] | 0 |
| Q07G42 | E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis OX=8364 GN=rnf12 PE=2 SV=1 | 0 | |
| TrEMBL | V4LLH0 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015609mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07225.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015609m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35670.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g028480.2N |
| Salicaceae | Populus euphratica | 1 | populus_peu30598 |