Basic Information
Locus ID:
Thhalv10015563m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 12716303 | 12718066 | + | Thhalv10015563m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 21,302.66 Da | 48.38 | 67.95 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 137 | 179 | 6.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 128 | 184 | 4.24E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 91 | 184 | 2.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 138 | 179 | 7.4E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 138 | 180 | 10.276328 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52155.1 | - | 0 |
| RefSeq | XP_024011842.1 | E3 ubiquitin-protein ligase Os04g0590900 [Eutrema salsugineum] | 0 |
| Q67YI6 | RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2 | 0 | |
| TrEMBL | V4LTT9 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015563mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G52150.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015563m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g14390.v2.2, Sp6g14400.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g031950.2N |