Basic Information
Locus ID:
Thhalv10015550m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_2 | 4362263 | 4363420 | + | Thhalv10015550m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.17 | 45,445.27 Da | 45.39 | 75.14 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 25 | 69 | 7.6E-9 | IPR001810 |
| Pfam | PF03478 | Protein of unknown function (DUF295) | 307 | 358 | 2.7E-8 | IPR005174 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 88 | 368 | 4.32E-8 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 26 | 64 | 3.6E-7 | - |
| SMART | SM00256 | fbox_2 | 30 | 70 | 5.6E-4 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G05970.1 | F-box family protein with a domain of unknown function (DUF295). | 0 |
| RefSeq | XP_006399827.1 | F-box protein At2g05970 [Eutrema salsugineum] | 0 |
| Q9ZUF1 | F-box protein At2g05970 OS=Arabidopsis thaliana OX=3702 GN=At2g05970 PE=2 SV=1 | 0 | |
| TrEMBL | V4KTJ9 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015550mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 36 | AT1G10110.1, AT1G27540.1, AT1G27550.1, AT1G27580.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10002155m.g.v1.0, Thhalv10003011m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp3g02700.v2.2, Sp3g24140.v2.2, Sp3g33180.v2.2 ... |
| Brassicaceae | Brassica nigra | 32 | BniB01g011090.2N, BniB02g015840.2N, BniB02g015860.2N ... |